• Abstract

    "Nanopore Technology's Impact on Cancer Biomarker Detection" highlights the revolutionary advancements in cancer biomarker detection driven by nanopore technology. This cutting-edge method has demonstrated unprecedented precision and sensitivity, offering promising avenues for early cancer diagnosis and personalized treatment strategies. By facilitating the passage of nucleic acids, proteins, and other cancer-related molecules through nanoscale pores, nanopore technology enables real-time detection and characterization, even for rare and hard-to-detect biomarkers. Its high-throughput nature allows for the identification of genetic mutations, alterations in micro-RNA levels, DNA methylation patterns, and even the presence of specific bacteria associated with cancer progression. The advantages of nanopore platforms extend beyond their sensitivity. These platforms are also portable, cost-effective, and highly scalable, making them suitable for a wide range of clinical and research applications. This includes point-of-care testing in resource-limited environments where traditional diagnostic methods may not be feasible. The integration of nanopore technology with advanced bioinformatics tools further enhances data interpretation, improving the overall accuracy and reliability of cancer biomarker detection. This combination of speed, affordability, and precision makes nanopore technology a game-changer in cancer research and diagnostics. Nanopore technology's versatility means that its impact spans various aspects of cancer research and clinical practice, from early detection and diagnosis to the development of more targeted, individualized treatment strategies. Ongoing research is continually refining nanopore technology, expanding its capabilities, and enabling deeper insights into cancer biology. As these advancements continue, nanopore technology is poised to significantly improve patient outcomes by facilitating earlier detection, more accurate diagnosis, and more effective, personalized treatments for a variety of cancers.

  • References

    1. Athanasopoulou, K., Boti, M. A., Adamopoulos, P. G., Skourou, P. C., & Scorilas, A. (2021). Third-generation sequencing: The spearhead towards the radical transformation of modern genomics. Life, 12(1), 30. https://doi.org/10.3390/life12010030
    2. Beuoy, M. (n.d.). Research guides: Systematic reviews & evidence synthesis methods: What is evidence synthesis? Retrieved February 7, 2024, from https://guides.lib.uci.edu/evidence-synthesis/what-is-evidence-synthesis
    3. Biosensors and nanotechnology for cancer diagnosis (lung and bronchus, breast, prostate, and colon): A systematic review. (n.d.). IOPscience. Retrieved February 7, 2024, from https://iopscience.iop.org/article/10.1088/1748-605X/ac41fd/meta
    4. Branton, D., Deamer, D. W., Marziali, A., Bayley, H., Benner, S. A., Butler, T., Di Ventra, M., Garaj, S., Hibbs, A., Huang, X., Jovanovich, S. B., Krstic, P. S., Lindsay, S., Ling, X. S., Mastrangelo, C. H., Meller, A., Oliver, J. S., Pershin, Y. V., Ramsey, J. M., … Schloss, J. A. (2008). The potential and challenges of nanopore sequencing. Nature Biotechnology, 26(10), 1146–1153. https://doi.org/10.1038/nbt.1495
    5. Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from nanopore sequencing. (n.d.). Genome Biology. Retrieved January 31, 2024, from https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02710-1
    6. Fabrication and applications of solid-state nanopores. (n.d.). PMC. Retrieved January 31, 2024, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6515193/
    7. Fried, J. P., Swett, J. L., Nadappuram, B. P., Mol, J. A., Edel, J. B., Ivanov, A. P., & Yates, J. R. (2021). In situ solid-state nanopore fabrication. Chemical Society Reviews, 50(8), 4974–4992. https://doi.org/10.1039/d0cs00924e
    8. He, Y., Tsutsui, M., Zhou, Y., & Miao, X.-S. (2021). Solid-state nanopore systems: From materials to applications. NPG Asia Materials, 13(1), 48. https://doi.org/10.1038/s41427-021-00313-z
    9. Heather, J. M., & Chain, B. (2016). The sequence of sequencers: The history of sequencing DNA. Genomics, 107(1), 1–8. https://doi.org/10.1016/j.ygeno.2015.11.003
    10. How nanopore sequencing works. (n.d.). Oxford Nanopore Technologies. Retrieved January 31, 2024, from https://nanoporetech.com/platform/technology
    11. Jain, M., Abu-Shumays, R., Olsen, H. E., & Akeson, M. (2022). Advances in nanopore direct RNA sequencing. Nature Methods, 19(10), 1160–1174. https://doi.org/10.1038/s41592-022-01633-w
    12. Li, M., Zhang, C., Zhou, L., Li, S., Cao, Y. J., Wang, L., Xiang, R., Shi, Y., & Piao, Y. (2020). Identification and validation of novel DNA methylation markers for early diagnosis of lung adenocarcinoma. Molecular Oncology, 14(11), 2744–2758. https://doi.org/10.1002/1878-0261.12767
    13. Locke, W. J., Guanzon, D., Ma, C., Liew, Y. J., Duesing, K. R., Fung, K. Y. C., & Ross, J. P. (2019). DNA methylation cancer biomarkers: Translation to the clinic. Frontiers in Genetics, 10, 1150. https://doi.org/10.3389/fgene.2019.01150
    14. Mohammadi, M. M., & Bavi, O. (2022). DNA sequencing: An overview of solid-state and biological nanopore-based methods. Biophysical Reviews, 14(1), 99–110. https://doi.org/10.1007/s12551-021-00857-y
    15. Nanopore sequencing technology and its applications. (n.d.). PMC. Retrieved February 15, 2025, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10333861/
    16. Recent advances in biological nanopores for nanopore sequencing, sensing and comparison of functional variations in MspA mutants. (n.d.). RSC Advances. Retrieved January 31, 2024, from https://pubs.rsc.org/en/content/articlelanding/2021/ra/d1ra02364k
    17. Slatko, B. E., Gardner, A. F., & Ausubel, F. M. (2018). Overview of next-generation sequencing technologies. Current Protocols in Molecular Biology, 122(1), e59. https://doi.org/10.1002/cpmb.59
    18. Slowing down DNA translocation through solid-state nanopores by edge-field leakage. (n.d.). Nature Communications. Retrieved January 31, 2024, from https://www.nature.com/articles/s41467-020-20409-4
    19. Solid-state nanopore sensors. (n.d.-a). Nature Reviews Materials. Retrieved February 1, 2024, from https://www.nature.com/articles/s41578-020-0229-6
    20. Solid-state nanopore sensors. (n.d.-b). Nature Reviews Materials. Retrieved January 31, 2024, from https://www.nature.com/articles/s41578-020-0229-6
    21. The potential and challenges of nanopore sequencing. (n.d.). Nature Biotechnology. Retrieved January 31, 2024, from https://www.nature.com/articles/nbt.1495
    22. Zhang, L., Huang, W., Zhang, S., Li, Q., Wang, Y., Chen, T., Jiang, H., Kong, D., Lv, Q., Zheng, Y., Ren, Y., Liu, P., Jiang, Y., & Chen, Y. (2022). Rapid detection of bacterial pathogens and antimicrobial resistance genes in clinical urine samples with urinary tract infection by metagenomic nanopore sequencing. Frontiers in Microbiology, 13, 858777. https://doi.org/10.3389/fmicb.2022.858777

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Ganjare, R., & Vagga, A. (2025). Nanopore technology’s impact on cancer biomarker detection. Multidisciplinary Reviews, 8(11), e2025293. https://doi.org/10.31893/multirev.2025293
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